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1

Pathways of amyloid-β aggregation depend on oligomer shape

Barz, Bogdan, Liao, Qinghua, Strodel, Birgit

Journal:

Journal of the American Chemical Society

Année:

2017

Langue:

english

Fichier:

PDF, 6.11 MB

english, 2017

2

Computational modeling of epithelial–mesenchymal transformations

Adrian Neagu, Vladimir Mironov, Ioan Kosztin, Bogdan Barz, Monica Neagu, Ricardo A. Moreno-Rodriguez, Roger R. Markwald, Gabor Forgacs

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2010

3

MUFOLD: A new solution for protein 3D structure prediction

Jingfen Zhang, Qingguo Wang, Bogdan Barz, Zhiquan He, Ioan Kosztin, Yi Shang, Dong Xu

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2010

4

Local, global and electronic structure of supported gold nanoclusters determined by EXAFS, XRD and XPS methods

Nicolae Aldea, Vasile Rednic, Stelian Pintea, Petru Marginean, Bogdan Barz, Andreea Gluhoi, Bernard E. Nieuwenhuys, Manfred Neumann, Xie Yaning, Florica Matei

Journal:

Superlattices and Microstructures

Année:

2009

Langue:

english

Fichier:

PDF, 735 KB

english, 2009

5

Membrane curvature and surface area per lipid affect the conformation and oligomeric state of HIV-1 fusion peptide: A combined FTIR and MD simulation study

Bogdan Barz, Tuck C. Wong, Ioan Kosztin

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Année:

2008

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2008

6

Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems

Flenner, Elijah, Janosi, Lorant, Barz, Bogdan, Neagu, Adrian, Forgacs, Gabor, Kosztin, Ioan

Journal:

Physical Review E

Année:

2012

Langue:

english

Fichier:

PDF, 845 KB

english, 2012

7

Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study

Bogdan Barz, Bradley S. Turner, Rama Bansil, Brigita Urbanc

Journal:

Journal of Biological Physics

Année:

2012

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2012

8

Towards In Silico Bioprinting

Neagu, Adrian, Flenner, Elijah, Barz, Bogdan, Norotte, Cyrille, Marga, Francoise, Jakab, Karoly, Kosztin, Ioan, Forgacs, Gabor

Journal:

Biophysical Journal

Année:

2009

Langue:

english

Fichier:

PDF, 120 KB

english, 2009

9

Selection of Near-Native Protein Structures by Means of Molecular Dynamics Simulations

Barz, Bogdan, Wang, Qingguo, Zhang, Jingfen, He, Zhiquan, Xu, Dong, Shang, Yi, Kosztin, Ioan

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 37 KB

english, 2010

10

Structural Basis for Amyloid β-Protein Toxicity Inhibition: A Multiscale Computational Study

Urbanc, Brigita, Barz, Bogdan, Betnel, Mark, Cruz, Luis, Bitan, Gal, Teplow, David B.

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 40 KB

english, 2011

11

Editorial Board

Urbanc, Brigita, Barz, Bogdan, Betnel, Mark, Cruz, Luis, Bitan, Gal, Teplow, David B.

Journal:

La Revue d'Homéopathie

Année:

2012

Langue:

french

Fichier:

PDF, 49 KB

french, 2012

12

Minimalistic Approach to Protein Assembly Modelling/Application to the Sickle Cell Hemoglobin Polymerization

Barz, Bogdan, Kepics, Christopher, Ferrone, Frank A., Urbanc, Brigita

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 36 KB

english, 2011

13

Editorial board

Barz, Bogdan, Kepics, Christopher, Ferrone, Frank A., Urbanc, Brigita

Journal:

Journal of Dairy Science

Année:

1943

Langue:

english

Fichier:

PDF, 83 KB

english, 1943

14

Cellular Particle Dynamics Simulation Of Bioprinted 3d Tissue Constructs

Barz, Bogdan, Das, Jhuma, Flenner, Elijah, Marga, Francoise, Norote, Cyrille, Forgacs, Gabor, Kosztin, Ioan

Journal:

Biophysical Journal

Année:

2009

Langue:

english

Fichier:

PDF, 32 KB

english, 2009

15

Thermodynamics of Protein Aggregation

Osborne, Kenneth L., Barz, Bogdan, Bachmann, Michael, Strodel, Birgit

Journal:

Physics Procedia

Année:

2014

Fichier:

PDF, 21.59 MB

2014

16

Minimal Model of Self-Assembly: Emergence of Diversity and Complexity

Barz, Bogdan, Urbanc, Brigita

Journal:

Journal of Physical Chemistry B

Année:

2014

Langue:

english

Fichier:

PDF, 6.14 MB

english, 2014

17

A Kinetic Approach to the Sequence–Aggregation Relationship in Disease-Related Protein Assembly

Barz, Bogdan, Wales, David J., Strodel, Birgit

Journal:

Journal of Physical Chemistry B

Année:

2014

Langue:

english

Fichier:

PDF, 3.24 MB

english, 2014

18

COMPUTATIONAL MODELING OF TISSUE SELF-ASSEMBLY

NEAGU, ADRIAN, KOSZTIN, IOAN, JAKAB, KAROLY, BARZ, BOGDAN, NEAGU, MONICA, JAMISON, RICHARD, FORGACS, GABOR

Journal:

Modern Physics Letters B

Année:

2006

Langue:

english

Fichier:

PDF, 1023 KB

english, 2006

19

Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski’s equality

Kosztin, Ioan, Barz, Bogdan, Janosi, Lorant

Journal:

The Journal of Chemical Physics

Année:

2006

Langue:

english

Fichier:

PDF, 670 KB

english, 2006

20

Understanding Amyloid-β Oligomerization at the Molecular Level: The Role of the Fibril Surface

Barz, Bogdan, Strodel, Birgit

Journal:

Chemistry - A European Journal

Année:

2016

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2016

21

Selective refinement and selection of near-native models in protein structure prediction

Zhang, Jiong, Barz, Bogdan, Zhang, Jingfen, Xu, Dong, Kosztin, Ioan

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 912 KB

english, 2015

22

Europe PMC Funders Group Europe PMC Funders Author Manuscripts A kinetic approach to the sequence – aggregation relationship in disease-related protein assembly

Barz, Bogdan, Wales, David J, Strodel, Birgit

Année:

2014

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2014

23

Conformational Transitions of the Amyloid-β Peptide Upon Copper(II) Binding and pH Changes

Liao, Qinghua, Owen, Michael C., Olubiyi, Olujide O., Barz, Bogdan, Strodel, Birgit

Journal:

Israel Journal of Chemistry

Année:

2017

Langue:

english

Fichier:

PDF, 5.16 MB

english, 2017

24

Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution

Wolff, Martin, Zhang-Haagen, Bo, Decker, Christina, Barz, Bogdan, Schneider, Mario, Biehl, Ralf, Radulescu, Aurel, Strodel, Birgit, Willbold, Dieter, Nagel-Steger, Luitgard

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 4.37 MB

english, 2017

25

Fully-Atomistic Aβ40 and Aβ42 Oligomers in Water: Observation of Pore-Like Conformations

Voelker, Matthew John, Barz, Bogdan, Urbanc, Brigita

Journal:

Journal of Chemical Theory and Computation

Année:

2017

Langue:

english

Fichier:

PDF, 3.58 MB

english, 2017

26

Aβ under stress: the effects of acidosis, Cu 2+ -binding, and oxidation on amyloid β-peptide dimers

Liao, Qinghua, Owen, Michael C., Bali, Sofia, Barz, Bogdan, Strodel, Birgit

Journal:

Chemical Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2018

27

Dimer Formation Enhances Structural Differences between Amyloid β-Protein (1–40) and (1–42): An Explicit-Solvent Molecular Dynamics Study

Barz, Bogdan, Urbanc, Brigita, Zheng, Jie

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2012

28

Bioactivation of quinolines in a recombinant estrogen receptor transactivation assay is catalyzed by N-methyltransferases

Brinkmann, Markus, Barz, Bogdan, Carriere, Danielle, Velki, Mirna, Smith, Kilian, Meyer-Alert, Henriette, Müller, Yvonne, Thalmann, Beat, Bluhm, Kerstin, Schiwy, Sabrina, Hotz, Simone, Salowsky, Helen

Journal:

Chemical Research in Toxicology

Année:

2019

Fichier:

PDF, 1.64 MB

2019

29

Bioactivation of quinolines in a recombinant estrogen receptor transactivation assay is catalyzed by N-methyltransferases

Brinkmann, Markus, Barz, Bogdan, Carriere, Danielle, Velki, Mirna, Smith, Kilian, Meyer-Alert, Henriette, Müller, Yvonne, Thalmann, Beat, Bluhm, Kerstin, Schiwy, Sabrina, Hotz, Simone, Salowsky, Helen

Journal:

Chemical Research in Toxicology

Année:

2019

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2019

30

Real-time feasibility of nonlinear model predictive control for semi-batch reactors subject to uncertainty and disturbances

Arellano-Garcia, Harvey, Barz, Tilman, Dorneanu, Bogdan, Vassiliadis, Vassilios S.

Journal:

Computers & Chemical Engineering

Année:

2020

Fichier:

PDF, 3.88 MB

2020

31

Compact fibril-like structure of amyloid Î²-peptide (1â42) monomers

Barz, Bogdan, Buell, Alexander K., Nath, Soumav

Journal:

Chemical Communications

Année:

2021

Fichier:

PDF, 3.50 MB

2021